org.simulator.math.odes
Class DormandPrince853Solver

java.lang.Object
  extended by org.simulator.math.odes.AbstractDESSolver
      extended by org.simulator.math.odes.AdaptiveStepsizeIntegrator
          extended by org.simulator.math.odes.FirstOrderSolver
              extended by org.simulator.math.odes.DormandPrince853Solver
All Implemented Interfaces:
Serializable, Cloneable, EventHandler, DelayValueHolder, DESSolver

public class DormandPrince853Solver
extends FirstOrderSolver

This class is a wrapper for the Dormand-Prince-853 solver in the Apache Math Library.

Since:
0.9
Version:
$Rev: 331 $
Author:
Roland Keller
See Also:
Serialized Form

Field Summary
 
Fields inherited from class org.simulator.math.odes.FirstOrderSolver
integrator
 
Fields inherited from class org.simulator.math.odes.AdaptiveStepsizeIntegrator
absTol, relTol
 
Fields inherited from interface org.apache.commons.math.ode.events.EventHandler
CONTINUE, RESET_DERIVATIVES, RESET_STATE, STOP
 
Constructor Summary
DormandPrince853Solver()
          default constructor
DormandPrince853Solver(DormandPrince853Solver solver)
          clone constructor
DormandPrince853Solver(double stepSize)
           
DormandPrince853Solver(double stepSize, boolean nonnegative)
           
 
Method Summary
 DormandPrince853Solver clone()
           
protected  void createIntegrator()
          initialization function of the integrator
 int getKiSAOterm()
          For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.
 String getName()
          This gives a human-readable name of this solver that can be displayed in a graphical user interface.
 
Methods inherited from class org.simulator.math.odes.FirstOrderSolver
computeChange, getIntegrator, hasSolverEventProcessing, setStepSize
 
Methods inherited from class org.simulator.math.odes.AdaptiveStepsizeIntegrator
getAbsTol, getRelTol, setAbsTol, setRelTol
 
Methods inherited from class org.simulator.math.odes.AbstractDESSolver
additionalResults, addPropertyChangeListener, computeDelayedValue, computeSteadyState, eventOccurred, firePropertyChange, g, getSerialversionuid, getStepSize, inBetweenSteps, initResultMatrix, initResultMatrix, initResultMatrix, isIncludeIntermediates, isNonnegative, isUnstable, processEvents, processEventsAndRules, processRules, removePropertyChangeListener, reset, resetState, setIncludeIntermediates, setNonnegative, setUnstableFlag, solve, solve, solve, solve
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DormandPrince853Solver

public DormandPrince853Solver()
default constructor


DormandPrince853Solver

public DormandPrince853Solver(DormandPrince853Solver solver)
clone constructor

Parameters:
solver -

DormandPrince853Solver

public DormandPrince853Solver(double stepSize)
Parameters:
stepSize -

DormandPrince853Solver

public DormandPrince853Solver(double stepSize,
                              boolean nonnegative)
Parameters:
stepSize -
nonnegative - the nonnegative flag of the super class
See Also:
AbstractDESSolver
Method Detail

clone

public DormandPrince853Solver clone()
Specified by:
clone in interface DESSolver
Specified by:
clone in class FirstOrderSolver
Returns:
the cloned solver

createIntegrator

protected void createIntegrator()
Description copied from class: FirstOrderSolver
initialization function of the integrator

Specified by:
createIntegrator in class FirstOrderSolver

getName

public String getName()
Description copied from class: AbstractDESSolver
This gives a human-readable name of this solver that can be displayed in a graphical user interface.

Specified by:
getName in class AbstractDESSolver
Returns:
A name that describes the underlying algorithm.

getKiSAOterm

public int getKiSAOterm()
Description copied from interface: DESSolver
For details about the Kinetic Simulation Algorithm Ontology (KiSAO) see http://biomodels.net/kisao/.

Returns:
the KiSAO term of the algorithm

Generated December 13 2012